Tutorial

Tutorial:

• Part 1: Pipeline and plugins
  • Creating a pipeline
  • Create a plugin
• Part 2: Tasks and commands
  • Getting started with tasks
  • Modify the workflow
  • Adding a cli argument
• Part 3: Models and database
  • Database creation
  • Models
  • Access our database table
• Part 4: Parallelize your workflows
  • The MapTask
  • Edit the tasks
  • Add MapTask to the command workflow
  • The parallel backend
  • Distribute workflows on a slurm cluster
  • Allocate multiple cpus for multiprocessing computations for each workflow
• Part 5: Testing
  • Introducing automated testing
  • Basic testing strategies
  • Tutorial code modifications
  • Pytest add-ons and configuration
  • Testing simple tasks
  • Testing complex tasks
  • Testing commands
  • Test coverage