Tutorial

Tutorial:

• Part 1: Pipeline and plugins
  • Creating a pipeline
  • Create a plugin
• Part 2: Tasks and commands
  • Getting started with tasks
  • Commands
  • Modify the workflow
  • Task targets
  • Adding task parameters
  • Conclusion
• Part 3: Workflow and caching
  • Workflows
  • Workflow caching
• Part 4: Parallelize your workflows
  • The MapWorkflow
  • Edit the tasks
  • Add MapWorkflow to the command workflow
  • The parallel backend
  • Distribute workflows on a slurm cluster
  • Allocate multiple cpus for multiprocessing computations for each workflow
• Part 5: Models and database
  • Database creation
  • Models
  • A word about the pipeline context
  • Access our database table
• Part 6: Products
• Part 7: Testing
  • Introducing automated testing
  • Basic testing strategies
  • Tutorial code modifications
  • Pytest add-ons and configuration
  • Testing simple tasks
  • Testing complex tasks
  • Testing commands
  • Test coverage